PUBLICATION
Resonant Raman-Active Polymer Dot Barcodes for Multiplex Cell Mapping
Jeong JE, Sutton JJ, Ryu HS, Kang M, Tay EJ, Nquyen TL, Gordon KC, Shim SH*, Woo HW*
ACS Nano, 17(5): 4800-4812 (2023)
Chang M, Lee OC, Bu G, Oh J, Yunn NO, Ryu SH, Kwon HB, Kolomeisky AB, Shim SH, Doh J, Jeon JH, Lee JB
Science Advances, 8: eabj3995 (2022)
Restoring single-molecule localizations with wavefront sensing adaptive optics for deep-tissue super-resolution imaging
Park S, Jo Y, Kang M, Hong JH, Ko S, Kim S, Park S, Park HC, Shim SH, Choi W
bioRxiv, doi: https://doi.org/10.1101/2021.11.18.469175
Kwon J, Elgawish M, Shim SH
Advanced Science, 9: 2101817 (2022)
Enhanced UnaG with Minimal Labeling Artifact for Single-molecule Localization Microscopy
Ko S, Kwon J, Shim SH
Frontiers Molecular Biosciences, 8: Article 647590 (2021)
Prelabeling Expansion Single‐Molecule Localization Microscopy with Minimal Linkage Error
Kang M, Lee J, Ko S, Shim SH
ChemBioChem, 22:1396-1399 (2021)
Super‐resolution microscopy of genome organization
Shim SH
Genes & Genomics, 43:281-287 (2021)
Invited article
Green-, Red-, and NIR-Emitting Polymer Dot Probes for Simultaneous Multicolor Cell Imaging with a Single Excitation Wavelength
Jeong JE, Uddin MA, Ryu HS, Kim HC, Kang M, Joung J, Park S, Shim SH, Woo HY
Chemistry of Materials 32(15): 6685-6696 (2020)
Reductively Caged, Photoactivatable DNA-PAINT for High- throughput Super-resolution Microscopy
Jang S, Kim M, Shim SH
Angewandte Chemie, 59(29): 11758-11762 (2020)
Bright Ligand-activatable Fluorescent Protein for High-quality Multicolor Live-cell Super-resolution Microscopy
Kwon J, Park JS, Kang M, Choi S, Park J, Kim GT, Lee C, Cha S, Rhee HW, Shim SH
Nature Communications, 11:273 (2020)
Amplified Expansion Stimulated Emission Depletion Microscopy
Kim D, Kim T, Lee J, Kim N, Shim SH
ChemBioChem, 20: 1260-1265 (2019)
Fluorescence enhancement of a ligand-activated fluorescent protein induced by collective noncovalent interactions
Lee E, Shim SH, Cho M
Chemical Science, 9:8325-8336 (2018)
Selected as "2018 Chemical Science HOT Article Collection" and "Front Cover Article.
Selective suppression of CARS signal with three-beam competing stimulated Raman scattering processes
Choi DS, Rao BJ, Kim D, Shim SH, Rhee H, Cho M
Phys. Chem. Chem. Phys. 20:17156-17170 (2018)
Selective Suppression of Stimulated Raman Scattering with Another Competing Stimulated Raman Scattering
Kim D, Choi DS, Kwon J, Shim SH, Rhee H, and Cho M
J. Phys. Chem. Lett., 8:6118–6123 (2017)
Cell imaging: An intracellular dance visualized
Shim SH
Nature 546:39-40 (2017)
CatSperζ regulates the structural continuity of sperm Ca2+ signaling domains and is required for normal fertility
Chung JJ, Miki K, Kim D, Shim SH, Shi HF, Hwang JY, Cai X, Iseri Y, Zhuang X, Clapham DE
eLife, e23082 (2017)
TIS21/BTG2 inhibits doxorubicin-induced stress fiber-vimentin networks via Nox4-ROS-ABI2-DRF2-linked signalcascade
Lim IK, Choi JA, Kim EY, Kim BN, Jang S, Ryu MS, Shim SH
Cellular Signaling, 30: 179-190 (2017)
Integrative Approach toward Uncovering the Origin of Photoluminescence in Dual Heteroatom-Doped Carbon Nanodot
Choi Y, Kang B, Lee J, Kim S, Kim GT, Kang H, Kim H, Shim SH, Lee, G, Kwon OH, and Kim BS
Chemistry of Materials, 28: 6840-6847 (2016)
Interrogating Surface Functional Group Heterogeneity of Activated Thermoplastics Using Super-Resolution Fluorescence Microscopy
O'Neil CE, Jackson JM, Shim SH, Soper SA
Analytical Chemistry, 88: 3686-3696 (2016)
Structurally distinct Ca2+ signaling domains of sperm flagella orchestrate tyrosine phosphorylation and motility
Chung JJ,* Shim SH*, Everley RA, Gygi SP, Zhuang X and Clapham D
Cell, 157: 808-822 (2014)
*Equal authors. Selected for PaperFlicks; Cell video abstract online.
Super-resolution imaging through the localization of single molecules: an overview”, in “Far-field Optical Nanoscopy
Xu K,* Shim SH* and Zhuang X
Springer Series on Fluorescence (Springer, Berlin, Heidelberg, 2013). Edited by Tinnefeld P, Eggeling C and Hell S. *Equal authors.
Super-resolution fluorescence imaging of organelles in live cells with photoswitchable membrane probes
Shim SH,* Xia C,* Zhong G, Babcock H, Vaughan J, Huang B, Wang X, Xu C, Bi GQ and Zhuang X
PNAS, 109: 13978-83 (2012).
*Equal authors.
Fast, three-dimensional super-resolution imaging of live cells
Jones SA,* Shim SH,*† He J and Zhuang X,†
Nature Methods, 8: 499-505 (2011)
*Equal authors. †Corresponding authors.
Two-dimensional IR spectroscopy and isotope labeling defines the pathway of amyloid formation with residue specific resolution
Shim SH, Gupta R, Ling YL, Strasfeld DB, Raleigh DP and Zanni MT
PNAS, 106: 6614-6619 (2009)
How to turn your pump-probe experiment into a multidimensional spectrometer: 2D IR and Vis spectroscopies via pulse shaping
Shim SH and Zanni MT
Physical Chemistry Chemical Physics, 11: 748 (2009)
Perpective article, Featured on the front cover
Two-dimensional IR spectroscopy provides evidence of an on-pathway intermediate in the membrane-catalyzed assembly of diabetic amyloid
Ling YL, Strasfeld DB, Shim SH, Raleigh DP and Zanni MT
Journal of Physical Chemistry B, 113: 2498 (2009)
New advances in mid-IR pulse shaping and its applications to 2D IR spectroscopy and ground state coherent control.
Strasfeld DB, Shim SH and Zanni MT
Advances in Chemical Physics, 141: 128 (2009)
Invited article
Automated 2D IR spectrometer mitigates the influence of high optical densities
Xiong W, Strasfeld DB, Shim SH, and Zanni MT
Vibrational Spectroscopy, 50: 136 (2009)
Tracking fibril formation in human Islet amyloid polypeptide with automated 2D-IR spectroscopy
Strasfeld DB, Ling YL, Shim SH, and Zanni MT
Journal of the American Chemical Society, 130: 6698 (2008)
Facile collection of two-dimensional electronic spectra using femtosecond pulse-shaping technology
Grumstrup EM,* Shim SH,* Montgomery MA,* Damrauer NH, and Zanni MT
Optics Express, 15: 16681 (2007)
*Equal authors.
Automated 2D IR spectroscopy using a mid-IR pulse shaper and application of this technology to the human islet amyloid polypeptide
Shim SH, Strasfeld DB, Ling YL and Zanni MT
PNAS, 104: 14197 (2007)
Controlling vibrational excitation with shaped mid-IR pulses
Strasfeld DB, Shim SH and Zanni MT
Physical Review Letters, 99: 038102 (2007)
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Generation and characterization of phase and amplitude shaped femtosecond mid-IR pulses
Shim SH, Strasfeld DB, Zanni MT
Optics Express, 14: 13120 (2006)
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Femtosecond pulse shaping directly in the mid-IR using acousto-optic modulation
Shim SH,* Strasfeld DB,* Fulmer EC, Zanni MT
Optics Letters, 31: 838-840 (2006)
*Equal authors.
Dual stacking of unbuffered saline samples, transient isotachophoresis plus induced pH junction focusing
Shim SH, Riaz A, Choi K and Chung DS
Electrophoresis, 24: 1603 (2003).
PepAssem, a peptide assembly algorithm for a complex protein mixture
Shim SH and Chung DS
Genome Informatics, 12: 366-367 (2001)
Molecular lens applied to benzene and carbon disulfide molecular beams
Chung H, Zhao BS, Lee SH, Cho K, Hwang SH, Shim SH, Lim SM, Kang WK and Chung DS
Journal of Chemical Physics, 114: 8293 (2001)